DreALTA0019338-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28660434-28662604:-
Coord C1 exon
chr12:28662454-28662604
Coord A exon
NA
Coord C2 exon
chr12:28660434-28660560
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATATCTGTTTTTCCTTACAGATC
3' ss Score
12.9
Exon sequences
Seq C1 exon
TCACGTTATTGGGGTGCAGATGCAGCCAGAAATCAAGTGCAGGGTCAAGTTCTTGACCAGACTGGGAATGTTATTCATCGGTTTGGTGGCTTTTGGCATGAAGGAATCTTCTGTGAGACACTACCCGTTCCACAGTGCATCTGGAAGCCAA
Seq A exon
NA
Seq C2 exon
ATCCACAGCCAAAGAACTACTTGCTCTACTATGGCTTCTCAAGCTTTGCAATGGAAATGAATGAGCTGGTGCCTGAACTCAAGCCCCTGCTGCCCCCTACAGACACACGCCTGCGCCCTGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981-28-25,28-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(14.2=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCGTTCCACAGTGCATC
R:
GTTCAGGCACCAGCTCATTCA
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]