BtaALTA0021014-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000046358 | PABPC1
Description
Bos taurus poly(A) binding protein, cytoplasmic 1 (PABPC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174568]
Coordinates
chr14:65826315-65828734:+
Coord C1 exon
chr14:65826315-65826410
Coord A exon
chr14:65828718-65828720
Coord C2 exon
chr14:65828721-65828734
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGTATGTTTCTCCTCCCCAGAAG
3' ss Score
9.36
Exon sequences
Seq C1 exon
GGTGTTAACCTTTATGTGAAAAATCTTGACGATGGTATTGATGATGAACGTCTCCGGAAGGAGTTTTCTCCATTTGGCACAATCACCAGTGCAAAG
Seq A exon
AAG
Seq C2 exon
AAGCCACTAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046358-19-12,19-11,19-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(40.6=87.5)
A:
NA
C2:
PF0007617=RRM_1=PD(56.5=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development