GgaALTA1022931-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000014450 | PABPC1
Description
polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026768]
Coordinates
chr2:128378721-128379417:-
Coord C1 exon
chr2:128379322-128379417
Coord A exon
NA
Coord C2 exon
chr2:128378721-128378854
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGTCTGCTTTTCGTCACCAGAAG
3' ss Score
8.48
Exon sequences
Seq C1 exon
GGTGTAAACCTTTACGTGAAAAATCTCGATGATGGAATTGATGATGAACGTCTTCGAAAAGAATTCTCCCCATTCGGTACAATCACCAGTGCAAAG
Seq A exon
NA
Seq C2 exon
AAGAAGCCACCAAAGCTGTCACAGAGATGAATGGTAGAATTGTGGCTACTAAACCACTGTATGTAGCTCTAGCCCAGCGTAAAGAAGAGCGCCAAGCTCATCTCACCAACCAGTATATGCAGAGAATGGCGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014450-12-9,12-8,12-7-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(40.6=87.5)
A:
NA
C2:
PF0007617=RRM_1=PD(56.5=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATTCGGTACAATCACCA
R:
TCTTTACGCTGGGCTAGAGCT
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]