BtaALTA0021872-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54404789-54409505:-
Coord C1 exon
chr19:54409377-54409505
Coord A exon
NA
Coord C2 exon
chr19:54404789-54404889
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GGTCTCCATGCGGTCCACAGGGA
3' ss Score
6.61
Exon sequences
Seq C1 exon
GAGCAGGAGCAGCTCTACCGCAGGGCAGGCGTGGTGTCCTCTGCCACCTTTGAGCAGCCGAGCCGGCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCGCTGATCAAGAACTTCTTCTGAGGACAGCAG
Seq A exon
NA
Seq C2 exon
GGATGGCCTTGATGAAGATGACAGGCATGGCTGGCGTCAGCTCTTTCAGCCGCGCTTCAGCGATGACTCCGGTCTGGGTGTCCCAGCGAGCTCCTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-31-23,31-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTCTGCCACCTTTGAG
R:
AGACCGGAGTCATCGCTGAAG
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development