BtaEX0026732 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54396459-54409505:-
Coord C1 exon
chr19:54409377-54409505
Coord A exon
chr19:54406201-54406237
Coord C2 exon
chr19:54396459-54404889
Length
37 bp
Sequences
Splice sites
3' ss Seq
GGTTTTGCTTCATCCCACAGATG
3' ss Score
10.07
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GAGCAGGAGCAGCTCTACCGCAGGGCAGGCGTGGTGTCCTCTGCCACCTTTGAGCAGCCGAGCCGGCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCGCTGATCAAGAACTTCTTCTGAGGACAGCAG
Seq A exon
ATGCTGGAAAGTGGCGTTTTATTTTCGTCGTCTCCAG
Seq C2 exon
GGATGGCCTTGATGAAGATGACAGGCATGGCTGGCGTCAGCTCTTTCAGCCGCGCTTCAGCGATGACTCCGGTCTGGGTGTCCCAGCGAGCTCCTGCAGGGATGGCACACCTGAGGGTCAGGGTGGTCCGTGGTGAGGTGACTGGTTCCCGTCTGTCTCGCTGGCAGGGAGGGGCGGGGCCTGGCTCACACCCCCACCCCTGCAGCGATGTGCCGAGGCCGGACTGGCACTGGGATCACCACACGTGGGGCTGCGAGCAGAGGGTGTGGTGGGGGGCTTCTCACTGCCAACGTCTGAGGGACGGCCCAGCCCAGCCCTGGGCTCCATTGTTTACATTTGTGGTGTTGTCAGGGGCAGGAAACTAACTCCAGCTAAAAGTGACCGATTACAGCTCCCCGCTCCCCTCCCCTGTGGCGTCTGTCCTGTCCGTGCGCAGTAAACGTGTAGACACACATTGAACTGTTGCCTCCTTGAACCGGACTTATTTCTACTCACCCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGATGGTGACTCCGCTG
R:
AGACCGGAGTCATCGCTGAAG
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development