BtaALTA0022765-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17647303-17647644:+
Coord C1 exon
chr7:17647303-17647412
Coord A exon
chr7:17647514-17647543
Coord C2 exon
chr7:17647544-17647644
Length
30 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTGTGTGATGACACATGCAGGGC
3' ss Score
3.87
Exon sequences
Seq C1 exon
GGGAGGAGTCGGACTGTCTGACGGAGTATGAGGAGGACGCGGGCCCTGAGTGCTCACGGGACGAAGGGGGCTCTCCGGAGGGCGCAAGCCCCAGCACTGCCTTGGAGATG
Seq A exon
GGCGTGGGGGGCCACCCCTTGTCCCCACAG
Seq C2 exon
GAGGAGGAGAAGTCGATCCTCCGGCACCGGCGCTGGCTGCCGCAGGAACCCTCCAGCCCTGCTGCAGATACCTGAGGACCTCCAGAGGGGTCCCTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-47-47,47-46-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGTATGAGGAGGACGC
R:
CGGAGGATCGACTTCTCCTCC
Band lengths:
113-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development