BtaINT0114805 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17647303-17647840:+
Coord C1 exon
chr7:17647303-17647412
Coord A exon
chr7:17647413-17647543
Coord C2 exon
chr7:17647544-17647840
Length
131 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
GCCACCCCTTGTCCCCACAGGAG
3' ss Score
11.29
Exon sequences
Seq C1 exon
GGGAGGAGTCGGACTGTCTGACGGAGTATGAGGAGGACGCGGGCCCTGAGTGCTCACGGGACGAAGGGGGCTCTCCGGAGGGCGCAAGCCCCAGCACTGCCTTGGAGATG
Seq A exon
GTGAGAGGAGGATGGCCCGGGCCCCCCTCCCCACCGCCCGCGCAGTGGGGAGACTCTGCTGATGTGCCCCCCCGGCCTGGGCTGTGTGATGACACATGCAGGGCGTGGGGGGCCACCCCTTGTCCCCACAG
Seq C2 exon
GAGGAGGAGAAGTCGATCCTCCGGCACCGGCGCTGGCTGCCGCAGGAACCCTCCAGCCCTGCTGCAGATACCTGAGGACCTCCAGAGGGGTCCCTGCCTTGAGCTAGACAACGGGTGAGCCCTATGGGGGTGGCTCACTCCCCCTCTGCCTGCTGCTATGCCTGTGGCCCTTTGGGTCCCCCTTGACCCCCAGGGCCCACACACTGGACTGGCCTGTCCCCCCCTCCCTGGCATGGGGGAGGGGCAGCACTGCACTGATGACCCTCGATCAGTCACACCAATAAACCTTCCCCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAGTCGGACTGTCTG
R:
GAGTGAGCCACCCCCATAGG
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]