Special

ENSMUSG00000004565 @ mm9

Biotype
protein_coding
Gene Symbol
Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3515384-3544266:+
Assembly
mm9
Other assemblies
mm10

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
40.34
40.15
0
Alternative 3'ss
3
chr8:3516507-3516509
+
59.66
40.15
0
Alternative 3'ss
90
chr8:3524011-3524100
+
61.85
63.39
0
Alternative 3'ss
102
chr8:3523999-3524100
+
37.55
63.39
0
Exon Skipping
138
chr8:3515925-3516062
+
11.93
18.48
0
Exon Skipping
117
chr8:3537767-3537883
+
18.48
64.22
0
Exon Skipping
117
chr8:3537969-3538085
+
82.28
74.58
0
Exon Skipping
88
chr8:3517077-3517164
+
96.07
18.96
0
Exon Skipping
62
chr8:3516507-3516568
+
57.72
73.55
0
Intron Retention
1124
chr8:3515557-3516680
+
23.13
46.43
0
Intron Retention
327
chr8:3516750-3517076
+
17.27
33.36
0
Intron Retention
448
chr8:3537521-3537968
+
21.3
56.1
0
Intron Retention
3205
chr8:3538086-3541290
+
22.06
73.6
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000032444 PNPLA6 1-to-1
Human hg19 ENSG00000032444 PNPLA6 1-to-1
Rat rn6 ENSRNOG00000000977 Pnpla6 1-to-1
Cow bosTau6 ENSBTAG00000032137 PNPLA6 1-to-1
Chicken galGal4 ENSGALG00000007881 PNPLA6 1-to-1
Chicken galGal3 ENSGALG00000007881 PNPLA6 1-to-1
Zebrafish danRer10 ENSDARG00000010773 pnpla6 1-to-1
Fruitfly dm6 FBgn0003656 sws 2-to-1
Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"