MmuEX0036050 @ mm9
Exon Skipping
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3515384-3516568:+
Coord C1 exon
chr8:3515384-3515556
Coord A exon
chr8:3515925-3516062
Coord C2 exon
chr8:3516510-3516568
Length
138 bp
Sequences
Splice sites
3' ss Seq
CGTCCCTGGTTACACATCCTGCA
3' ss Score
-13.91
5' ss Seq
CTTTTCAAT
5' ss Score
-20.44
Exon sequences
Seq C1 exon
AAAGGTGCCGCGTCTGAGGCAGCGGGCAGAAAACTAGGGGTGTTGGCCGAAGCTGGGTGGACCTGGTTGCAGCTCCTGAATGGTACGAGTTTCCATCGACCGAGCAAAGGTGTCCCTTCGAGGACTGTTAGAGAGCTTCAGCTTTGCCCCGGATCGATTTGTCCTGATTCCGG
Seq A exon
GCATCATTTCACTAATCCCAGGGATGCTCCGCACCGCGAGACCCGGTAACTTTCCTTTTACGTGACAGTTAAATCTCCAAGCCCGAGCCTATAACACTTTGGGAGCTCATCTTACTCCGATGGCCCTAGAGCCCCCTT
Seq C2 exon
TACCCCTCTAGACGCTCTCACCCCAACCCCGGCGAATGGAGGAGTCACTCCAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTGCCGCGTCTGAG
R:
GGAGTGACTCCTCCATTCGCC
Band lengths:
224-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: