MmuEX0036053 @ mm9
Exon Skipping
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3537451-3541592:+
Coord C1 exon
chr8:3537451-3537520
Coord A exon
chr8:3537969-3538085
Coord C2 exon
chr8:3541291-3541592
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTGTATCCCACCGGGCAGGCT
3' ss Score
4.91
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GACCTGTGGCTGCCTTACTTCAATGTGACCACAGACATCACTGCCTCTGCCATGCGCGTCCACAAAGATG
Seq A exon
GCTCCCTGTGGCGGTATGTACGTGCCAGCATGACGCTCTCGGGCTACCTACCCCCGCTGTGCGACCCAAAGGATGGGCACCTGCTCATGGATGGTGGCTACATCAACAACCTGCCAG
Seq C2 exon
CGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGAGACAGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAAAGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCTTGGCGTACGTGTCCTGTGTGCGGCAGCTAGAAGTCGTCAAGTCCAGCTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTTGGAAAGTTTGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-'37-39,'37-38,39-39
Average complexity
ME(37_38-38_39[100=99])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=4.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCACTGCCTCTGCCATG
R:
CTTGACGACTTCTAGCTGCCG
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: