GgaEX1044852 @ galGal3
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2079860-2085127:+
Coord C1 exon
chr17:2079860-2079929
Coord A exon
chr17:2081830-2081946
Coord C2 exon
chr17:2084979-2085127
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTTCGTTTCTCTCTTGCAGGCT
3' ss Score
11.75
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GATCTGTGGATTCCTTACTTCACAATCACAACTGACATCACTGCCTCAGCAATGAGGGTCCACACCGATG
Seq A exon
GCTCTCTGTGGAGGTACATCCGTGCCAGCATGTCTCTCTCTGGGTACATGCCCCCGCTCTGCGACCCAAAGGATGGGCACCTCCTGATGGATGGAGGTTACGTCAACAACCTTCCTG
Seq C2 exon
CTGATGTGGCGAGGTCCATGGGTGCAAAGGTGGTGATAGCAATCGATGTGGGGAGCCGGGATGAGACCAACCTCACCAACTACGGTGACTGCTTGTCCGGCTGGTGGCTGCTGTGGAAGAGGTGGAATCCACTGGCTGAGAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTGGATTCCTTACTTCACA
R:
TTGACTTTCTCAGCCAGTGGA
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]