DreEX0056707 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24544678-24545918:-
Coord C1 exon
chr5:24545849-24545918
Coord A exon
chr5:24545657-24545773
Coord C2 exon
chr5:24544678-24544826
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCTAGTCTCCATATTTTAGGCT
3' ss Score
5.96
5' ss Seq
CGGGTTCAG
5' ss Score
-4.66
Exon sequences
Seq C1 exon
GACCTTTGGATCCCATATTTCAACATCACCACAGACATCACAGCCTCCTCCATGAGAGTCCACACTGATG
Seq A exon
GCTCTCTGTGGAGGTATGTTCGGGCCAGTATGTCTCTTTCTGGATATCTTCCTCCATTATGTGACCCTAAAGATGGCCATTTGCTCATGGATGGAGGCTACATCAATAACCTTCCGG
Seq C2 exon
CTGACACAGCTCGTTCGATGGGTGCCAAGCTGGTGATTGCAGTTGATGTGGGCAGTCAGGATGAAACTGATCTCACTAACTATGGAGACTCTTTATCTGGATGGTGGCTGCTTTGGAAACGCTTGAACCCACTGGCAGAAAAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'34-42,'34-41,35-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTGGATCCCATATTTCAACA
R:
TTCACTTTTTCTGCCAGTGGGT
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]