MmuEX6099386 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25050258-25051749:+
Coord C1 exon
chr2:25050258-25050327
Coord A exon
chr2:25050855-25050971
Coord C2 exon
chr2:25051601-25051749
Length
117 bp
Sequences
Splice sites
3' ss Seq
CGATCTCTTTCATACTCCAGGCT
3' ss Score
6.45
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GACCTGTGGCTCCCCTACTTTGCCATCACCACCGACATCACGGCCTCTGCCATGCGGGTTCACACAGATG
Seq A exon
GCTCTCTGTGGAGGTATGTCCGTGCAAGCATGTCCTTGTCAGGCTATATGCCCCCACTCTGCGACCCCAAGGATGGACACCTGCTGATGGATGGTGGTTACATCAACAACCTCCCAG
Seq C2 exon
CGGATGTGGCAAGATCCATGGGGGCAAAGGTTGTGATTGCCATCGATGTTGGCAGCCGGGACGAGACAGACCTCACCAACTATGGCGATGCCTTGTCTGGATGGTGGCTGCTTTGGAAACGCTGGAACCCCTTGGCTACAAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-'54-69,'54-65,64-69=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTCCCCTACTTT
R:
TTGACTTTTGTAGCCAAGGGGT
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types