RnoEX6015779 @ rn6
Exon Skipping
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2258061-2259540:+
Coord C1 exon
chr3:2258061-2258130
Coord A exon
chr3:2258676-2258792
Coord C2 exon
chr3:2259392-2259540
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGATCTCTTTGCTGCTCCAGGCT
3' ss Score
5.45
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GACCTGTGGCTCCCCTACTTTGCCATCACCACCGACATCACGGCCTCTGCCATGCGGGTTCACACAGATG
Seq A exon
GCTCTCTGTGGAGGTATGTCCGTGCAAGCATGTCCTTGTCAGGCTACATGCCCCCACTCTGTGACCCCAAGGATGGACACCTGCTGATGGATGGCGGTTACATCAACAATCTCCCAG
Seq C2 exon
CGGATGTGGCAAGATCCATGGGGGCAAAGGTTGTGATTGCCATCGATGTTGGCAGCCGGGACGAGACGGACCTCACCAACTACGGTGATGCTTTGTCTGGATGGTGGCTGCTTTGGAAACGCTGGAACCCCTTGGCCACAAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190-'41-46,'41-45,42-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTCCCCTACTTT
R:
TTGACTTTTGTGGCCAAGGGG
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]