Special

FBgn0003656 @ dm6

Biotype
protein_coding
Gene Symbol
sws
Description
The gene swiss cheese is referred to in FlyBase by the symbol Dmelsws (CG2212, FBgn0003656). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is X:7956820..7968236. Its molecular function is described by: lysophospholipase activity; protein binding; protein kinase A catalytic subunit binding. It is involved in the biological process described with 11 unique terms, many of which group under: multicellular organismal process; programmed cell death; cellular lipid metabolic process; apoptotic process; cellular process. 32 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; cytoplasm; organelle; adult sense organ; cell body rind of lamina. The phenotypic classes of alleles include: short lived; phenotype; phototaxis defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late pupal stages, in stages of adults of both sexes.
Coordinates
chrX:7956820-7968236:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
117
chrX:7959996-7960112
-
78.36
69.86
0
Exon Skipping
117
chrX:7958978-7959094
-
30.37
82.29
0
Intron Retention
66
chrX:7963142-7963207
-
1.58
68.89
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000032444 PNPLA6 1-to-2
Human hg38 ENSG00000130653 PNPLA7 1-to-2
Human hg19 ENSG00000032444 PNPLA6 1-to-2
Human hg19 ENSG00000130653 PNPLA7 1-to-2
Mouse mm10 ENSMUSG00000004565 Pnpla6 1-to-2
Mouse mm10 ENSMUSG00000036833 Pnpla7 1-to-2
Mouse mm9 ENSMUSG00000004565 Pnpla6 1-to-2
Mouse mm9 ENSMUSG00000036833 Pnpla7 1-to-2
Rat rn6 ENSRNOG00000000977 Pnpla6 1-to-2
Rat rn6 ENSRNOG00000008190 Pnpla7 1-to-2
Cow bosTau6 ENSBTAG00000012126 PNPLA7 1-to-2
Cow bosTau6 ENSBTAG00000032137 PNPLA6 1-to-2
Chicken galGal4 ENSGALG00000008736 PNPLA7 1-to-2
Chicken galGal3 ENSGALG00000008736 PNPLA7 1-to-2
Zebrafish danRer10 ENSDARG00000010773 pnpla6 1-to-3
Zebrafish danRer10 ENSDARG00000040002 pnpla7b 1-to-3
Zebrafish danRer10 ENSDARG00000062986 pnpla7a 1-to-3