GgaEX1044852 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1680190-1685457:+
Coord C1 exon
chr17:1680190-1680259
Coord A exon
chr17:1682160-1682276
Coord C2 exon
chr17:1685309-1685457
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTTCGTTTCTCTCTTGCAGGCT
3' ss Score
11.75
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GATCTGTGGATTCCTTACTTCACAATCACAACTGACATCACTGCCTCAGCAATGAGGGTCCACACCGATG
Seq A exon
GCTCTCTGTGGAGGTACATCCGTGCCAGCATGTCTCTCTCTGGGTACATGCCCCCGCTCTGCGACCCAAAGGATGGGCACCTCCTGATGGATGGAGGTTACGTCAACAACCTTCCTG
Seq C2 exon
CTGATGTGGCGAGGTCCATGGGTGCAAAGGTGGTGATAGCAATCGATGTGGGGAGCCGGGATGAGACCAACCTCACCAACTACGGTGACTGCTTGTCCGGCTGGTGGCTGCTGTGGAAGAGGTGGAATCCACTGGCTGAGAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'49-48,'49-47,50-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTGGATTCCTTACTTCACA
R:
TTGACTTTCTCAGCCAGTGGA
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]