BtaEX0027735 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17643226-17645642:+
Coord C1 exon
chr7:17643226-17643342
Coord A exon
chr7:17643429-17643545
Coord C2 exon
chr7:17645341-17645642
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTCCCGCTGGGCAGGCT
3' ss Score
7.36
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTGCGTGTGGCGCTACGTCCGGGCCAGTGCCTCCTACTGCCCCTACCTGCCCCCGCTCTGCGACCCCAGGGACGGGCACCTGCTGGTGGATGGGTGCTTCGTCAACAACGTGCCAG
Seq A exon
GCTCCCTGTGGCGATACGTGCGTGCCAGCATGACTCTCTCGGGCTACCTGCCGCCGCTGTGCGACCCCAAGGATGGGCACCTCCTCATGGACGGCGGCTACATCAACAACCTGCCAG
Seq C2 exon
CGGACATCGCCCGCAGCATGGGTGCCAAGACAGTCATCGCCATCGACGTGGGGAGCCAGGACGAGACAGACCTTAGCACATACGGGGACAGCCTGTCTGGCTGGTGGCTTCTGTGGAAGCGGCTGAATCCCTGGGCAGACAAGATCAAGGTTCCAGATATGGCAGAGATCCAGTCTCGCCTGGCCTACGTGTCCTGCGTGCGACAGCTGGAGGTTGTGAAGTCCAGCTCCTACTGTGAGTACCTGCGCCCACCCATCGACTGCTTCAAGACCATGGACTTCGGGAAGTTCGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(25.8=100),PF0173417=Patatin=PU(2.2=2.5)
A:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=FE(86.7=100)
C2:
PF0173417=Patatin=PD(2.6=4.0)
Main Inclusion Isoform:
ENSBTAT00000007351fB5336
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGTGCTTCGTCAACAA
R:
GGACTTCACAACCTCCAGCTG
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development