BtaEX0027732 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17642926-17643545:+
Coord C1 exon
chr7:17642926-17642995
Coord A exon
chr7:17643226-17643342
Coord C2 exon
chr7:17643429-17643545
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCACCCCCCGTCCCCGCAGGCT
3' ss Score
12.31
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GACCTGTGGCTGCCATACTTCAACGTGACCACGGATATCACCTCCTCAGCCATGCGTGTCCACAAAGATG
Seq A exon
GCTGCGTGTGGCGCTACGTCCGGGCCAGTGCCTCCTACTGCCCCTACCTGCCCCCGCTCTGCGACCCCAGGGACGGGCACCTGCTGGTGGATGGGTGCTTCGTCAACAACGTGCCAG
Seq C2 exon
GCTCCCTGTGGCGATACGTGCGTGCCAGCATGACTCTCTCGGGCTACCTGCCGCCGCTGTGCGACCCCAAGGATGGGCACCTCCTCATGGACGGCGGCTACATCAACAACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-'39-36,'39-35,40-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(14.8=100)
A:
PF0173417=Patatin=FE(25.8=100),PF0173417=Patatin=PU(2.2=2.5)
C2:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=FE(86.7=100)
Main Inclusion Isoform:
ENSBTAT00000007351fB5336
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTGCCATACTTC
R:
TGGCAGGTTGTTGATGTAGCC
Band lengths:
186-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development