GgaEX0011217 @ galGal3
Exon Skipping
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60658353-60661606:+
Coord C1 exon
chrUn_random:60658353-60658422
Coord A exon
chrUn_random:60659300-60659416
Coord C2 exon
chrUn_random:60661458-60661606
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTCCTCTCCCTCCGGCAGGCA
3' ss Score
9.57
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GACCTTTGGCTTCCTTACTTCAACGTCACAACAGACATCACGGCCTCAGCCATGCGGGTGCACACGGATG
Seq A exon
GCAGTCTTTGGCGTTACATCCGAGCCAGTGCCTCCTATACCCCCTACCTGCCTCCGCTCTGCGACCCCAAGGACAGCCACTGCCTCGTGGACGGCTGCTATGTTAACAATGTCCCAG
Seq C2 exon
CTGACATCGCCCGCAACATGGGTGCCAAGACGGTGATTGCCATCGACGTGGGCAGCCAGGACGAGACGGACCTGTGCAACTACGGGGACAGCCTGTCGGGCTGGTGGCTGCTCTGGAAGCGCCTCAACCCTTGGGCTGAAAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881-'25-27,'25-25,26-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTGGCTTCCTTACTTCA
R:
TTGACTTTTTCAGCCCAAGGGT
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]