RnoEX0067729 @ rn6
Exon Skipping
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2091114-2095717:+
Coord C1 exon
chr12:2091114-2091183
Coord A exon
chr12:2091426-2091542
Coord C2 exon
chr12:2095416-2095717
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGCCATCCCCCACAGGCT
3' ss Score
10.11
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GACCTGTGGCTGCCTTACTTCAATGTGACCACAGACATCACTGCATCCGCCATGCGTGTCCACAAAGATG
Seq A exon
GCTGCGTGTGGCGTTACGTCCGGGCCAGTGCCTCCTACTGTCCCTACCTGCCCCCACTCTGCGACCCCAAGGACGGGCACCTGCTGGTGGACGGGTGTTACGTTAACAACGTTCCAG
Seq C2 exon
CGGATATCGCCCGCAGCATGGGGGCCAAAACGGTCATTGCCATCGACGTGGGAAGCCAGGATGAGACGGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAACGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCCTGGCGTATGTGTCCTGTGTGCGGCAGCTGGAAGTTGTCAAGTCTAGTTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977_MULTIEX1-27/31=26-29
Average complexity
ME(27-28[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=FE(23.9=100),PF0173417=Patatin=PU(0.1=0.0)
C2:
PF0173417=Patatin=PD(2.4=4.0)
Main Inclusion Isoform:
ENSRNOT00000001298fB11001
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTGCCTTACTTC
R:
TGGATCTCAGCCATGTCTGGA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]