RnoINT0114513 @ rn6
Intron Retention
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2091114-2091744:+
Coord C1 exon
chr12:2091114-2091183
Coord A exon
chr12:2091184-2091627
Coord C2 exon
chr12:2091628-2091744
Length
444 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CTGTGTATCCCACCGGGCAGGCT
3' ss Score
4.91
Exon sequences
Seq C1 exon
GACCTGTGGCTGCCTTACTTCAATGTGACCACAGACATCACTGCATCCGCCATGCGTGTCCACAAAGATG
Seq A exon
GTGGGTGCCATCCTGCCACGCCCTGCTACAATCGTGCTGGCCAGCGTGTGGGGATGGGTTGTAGGGGAGGGCAGCTGAGCATCTGGGACGTTGTTAACACAAGTGACCGTCCACCTGGGCCCGTCCACCGATCACTAACCATCACCCACTAATGTCCCGAAGGCCCCAGGTATGTCCGTTCTCAGGGGTGGGGAGCCGGGAGGCTTGTCGGGCACCTCACGCCCTCCCGCCATCCCCCACAGGCTGCGTGTGGCGTTACGTCCGGGCCAGTGCCTCCTACTGTCCCTACCTGCCCCCACTCTGCGACCCCAAGGACGGGCACCTGCTGGTGGACGGGTGTTACGTTAACAACGTTCCAGGTCAGCGAGCCCACAGGCTGACCGGGCCTCCAAGTGTGTCTGAGCGTGTCTGTGCGTGTCTGTGTCTGTGTATCCCACCGGGCAG
Seq C2 exon
GCTCCCTGTGGCGCTATGTGCGTGCCAGCATGACGCTCTCGGGCTACCTGCCCCCGCTGTGCGACCCGAAGGATGGGCACCTGCTCATGGATGGTGGCTACATCAACAACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977:ENSRNOT00000001298:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
NA
C2:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=PU(88.6=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTGCCTTACTTC
R:
GGCAGGTTGTTGATGTAGCCA
Band lengths:
185-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]