BtaINT0114799 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17642926-17643545:+
Coord C1 exon
chr7:17642926-17642995
Coord A exon
chr7:17642996-17643428
Coord C2 exon
chr7:17643429-17643545
Length
433 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
CTGTGTGTCCCGCTGGGCAGGCT
3' ss Score
7.36
Exon sequences
Seq C1 exon
GACCTGTGGCTGCCATACTTCAACGTGACCACGGATATCACCTCCTCAGCCATGCGTGTCCACAAAGATG
Seq A exon
GTGCGTGCCCCCAGGCGGCCCAGCCACAACCACTGGGGCCGTTTGGGGAGTGGGTGCTGGGGGGGCAGCCAAGTTGTTAACATGAGTGACCATCCCTCCTGGCCTGATTGCTGAGCACTAACCGTCACCCACTAATGCCCCAGAGGGCCCCAGGTATGTCTGTCCTGGGGAGGGCGGGGGGGTTGGGAGACTTGTCGGGCGCCTCACCCCCTCACCCCCCGTCCCCGCAGGCTGCGTGTGGCGCTACGTCCGGGCCAGTGCCTCCTACTGCCCCTACCTGCCCCCGCTCTGCGACCCCAGGGACGGGCACCTGCTGGTGGATGGGTGCTTCGTCAACAACGTGCCAGGTCAGCGAGCCCACGGGGCTGGCCGGGCCTCTGAGTGCGTCTGAGTGTGCCTGTGCGTGTCTGTGTCTGTGTGTCCCGCTGGGCAG
Seq C2 exon
GCTCCCTGTGGCGATACGTGCGTGCCAGCATGACTCTCTCGGGCTACCTGCCGCCGCTGTGCGACCCCAAGGATGGGCACCTCCTCATGGACGGCGGCTACATCAACAACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(14.8=100)
A:
NA
C2:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=FE(86.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTGCCATACTTC
R:
TGGCAGGTTGTTGATGTAGCC
Band lengths:
186-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]