RnoEX0067706 @ rn6
Exon Skipping
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2091114-2095717:+
Coord C1 exon
chr12:2091114-2091183
Coord A exon
chr12:2091628-2091744
Coord C2 exon
chr12:2095416-2095717
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTGTATCCCACCGGGCAGGCT
3' ss Score
4.91
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GACCTGTGGCTGCCTTACTTCAATGTGACCACAGACATCACTGCATCCGCCATGCGTGTCCACAAAGATG
Seq A exon
GCTCCCTGTGGCGCTATGTGCGTGCCAGCATGACGCTCTCGGGCTACCTGCCCCCGCTGTGCGACCCGAAGGATGGGCACCTGCTCATGGATGGTGGCTACATCAACAACCTGCCAG
Seq C2 exon
CGGATATCGCCCGCAGCATGGGGGCCAAAACGGTCATTGCCATCGACGTGGGAAGCCAGGATGAGACGGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAACGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCCTGGCGTATGTGTCCTGTGTGCGGCAGCTGGAAGTTGTCAAGTCTAGTTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977-'36-41,'36-38,39-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=PU(88.6=97.5)
C2:
PF0173417=Patatin=PD(2.4=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTGCCTTACTTC
R:
TGGATCTCAGCCATGTCTGGA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]