RnoINT0114514 @ rn6
Intron Retention
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2091628-2095717:+
Coord C1 exon
chr12:2091628-2091744
Coord A exon
chr12:2091745-2095415
Coord C2 exon
chr12:2095416-2095717
Length
3671 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CTGACCTCCTGGCTCTACAGCGG
3' ss Score
8.07
Exon sequences
Seq C1 exon
GCTCCCTGTGGCGCTATGTGCGTGCCAGCATGACGCTCTCGGGCTACCTGCCCCCGCTGTGCGACCCGAAGGATGGGCACCTGCTCATGGATGGTGGCTACATCAACAACCTGCCAG
Seq A exon
GCAAGTGGCTGCCCACTCGCATCTGCATGGACCCTGGTCACCAGGCACTGCACACACAGACTAGAAGGGACAAGTCATATGGATGGAAAAGCTCCAGAGGGCATACACAGCTTGCACAGTGACATAGACTGACACACATGCAGGCATGCATATGTCCATGCATACAGATATGTGAGTGTATGTGGACAGTAACATGAACATTTGAAAAGTCCACACATTAGACACGGTAGCACACACCTCTGATCACAGCACTCGGGAGGCAGAGGCAAGCAGATCTCTGAGTTCGAGGCCACCCAGGGCTAAAGAGAGAAACCCAGTCTGGAAGACAAAACAAACAAACAAAAAGGGGGGAAAAAAGTTCAAGGCCTTCCTTAGCTACAAAATGGATTTGAAGCCATCCTGGGCTACATGAGCCCCTATCTCAAAAGATAAACTCTTTTAGTTAAAAGTAGGATTTGACTACTCAGTTGGTGGAGAACGTGCCTTGTGTGAACGAAGCTCTACATTCTCACCCCTGCTCACACAAAACCAGACATGGTGCTGCACACCCCTTATCCCGGGATTCAGACTGAAGCAGGAGGATCAGGAATCCAGGGCCATTTTAAGCTACAAAGCAAGTTCCAGACAAGCCTGAGCTACAGGAAACCCTGTCTGTAAATAAATAACAAATGAAACACCTTCCCATTCTCACGTGTCACAGTGGACACAGAGATGACAGACATACAAGGGACTAGCGCTGGCACCCGGTTATGCATGCACATACATACGTACATACATACATACATACATACATACATACATACATACAGAACACGCTTTGACATGTGCACAGCAGCTCCAGATGCACACCTTTCAGGGGCTTGCATAGGTAGAACCCAAGCACATGAAGGAATAAACATGTCTGTGTGATGTAATTAGCCGCACTGACCCGTGTGTTCACACCTTCCCTGCACACTCTATGGACTATGCGTGTATAGACTTGTAGATTGAATAAGGTGCCAATGTGACCAAGATAAGCATTTTTTCACAACCACCAACTTAAAGGGTTTTTGTTTTGTTTCTTAAGACAGGATCTCACATAGCTCATGGTGGCCTCAAACTTAGGTAATCAAAAGATAGTCTTGAATCCTCATGCCTCTATGTCTGGGCTGCTGGGATGACAAATGGGTTCTCCATGCCCAGTTTACATGGTGCTAGGAATGGGGTCCAGGACTTTCACGCTGTGCAGACACTCTACTAACTGGGCTACATTCCCAGCATGCTTACTGACTTCACAAGCATAGACGGGAGGTAGATTCAAGTGCAGCTCTGAAGAAAACTCATTCTCTTGATGGGTGGTGGCATACACCTTTAATGCCTGCACGCCAGAGGCAGAGGCAGAGATCTCTGAGTTTGAGGCCAGCCTGGTCTACATAGTGAGTTTCAGGACAGCCAAGGCTACATAGAGAAACCCTGTCTCAAAAAACACAAACCAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGAAAGCACAAGGCCCTGGGTTCAGTCCTCAGCTCTGGAAAAAAAAACAAATAACAAAAAACACAAACCAAACCAATCAACCAACCAAGAAACTCAGTGTCAAAAGTGTGCGCCCCAGAAACACGTTAGTTACACACTTGATCTCATAGACCAGGAACACATTAGTTACACACACTTGATCTCAAGACCAGGAACACGTTAGTTACACACACTTGATCTCATGGACCAGAAACAAGTTAGTTACACACTTGATCTCATAGACCAGAAACATGTTAGCTACACACACTTGATCTCATAGACCAGGAACACGTTAGTTACACATACTTGATCTCATAGACCAGGATCTGGTCAGCTGTACCACACTGTGTGCATCTATCTGGGTCTGTGTTTAACTTTATGAATAAAGGATTTTTAAAATATAATTACACATGGAGGTTGGAGGACAACTTATAGTAGTTATTTTTCTCATTCCAAAATGTGGGTCCTGGGAGTTGAACTCTGGTTATGAATAGTTTGGTAAGGGCCCCGCCTGCCGAGTCATCTCAGTGGCCCTGTGTTGGTGGTTGGTTGGTCGGTCGGTCGACTGGTTGGTTAGTTGACTGGTTAGTTAGTTATTGTTAAACCTAAACTGGCCTCTAATTTGCTACATAGCTGAGAGTGATCTTGAATTTACAGTCCTTCTCCCACCTCCCAAGTGTGGGGATTCTAAGCTTGTAAATGAGGGTGCACTGGGGTAGCCGTGCCCCAATCCACCTCTTATCTGCGGTTCCCATTGCAGCACAACAACAGGGGTGAAAACTCAGGGCTGAACTAAAAGCATTTTCTCGTGATCCTGCTAGCACTGGAAATGTAACCATACTTGTAAACACGGCCACCATCCCTCACATGACACTCACATAGGTGTTCACAGACCTACAGGTACACGGGCAGACATGGATATGCAGACACATACAGGGCTGGAAAAGTGTCTCTGTGGAAGGCGCAGACATAACCTGCACTCCATCCCAGTGCCCGTGTAAAGATGGCCACAGTGGTGGACATCCATAGCCCCAGCACTTTGGGGGGAAGGAGTAGACTTGAGGATCCCCAGGGCTCACTGGCCAGCCAGTCTAGAGGGAAGGATGAACCCTAGGTTCAGTGGGACACCTTTTCTCAAAAAAGGTGTGGGCTTGGCAGTTAAGAATGAGCTCTTGAAGAGGACCTACATTCTTCCCAGCACCTCCGTCTTCACAACTACCTGTAACTATCTCCAGAGACATGGAATGCCTCTCTTGGCCTCTGCAGGCATTGTACACACGTGCACATAAACACAGGCAGGCACACACCTGCAGACACAGAAAGAAATCTTTTTTTTTTTCTTCTTTTTTTTTGGTTTCTGAGACAGGGTTTCTCTGTGTAGTCCACACAGTCCTGGAACTCACTGTGTAGACCAGGCTGACCATGAACTCAGAGACCTGCCTGTCTCTGCTTCCCGAGTGCTGGGGTTAAAAGTGTGCATCACCTAGTGCTTTTTTTAAGGTGTCAAGTGATTGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAGAAAAGGGAAGAAAAAAAAAAAAGGTGTCAAGTGATAAGGGAAGACACTCGTGTTAAACTCCAGCCTGCACACAACACACACAGATGGACATTTCCTGACATGCATTCGGACAGGCCGAGCCAGAGGTGCAGGCACAGGAAGACAGTGCTTCCCACAGGGTCTCAGAAAAGAGGGATGTAAACACTCACAGGCACATGCAGGCGACATGTGTGTGACACACACAGCCAGCAACATAAACTCAAGAATAACTACACAAAGATGAATAGACAGGCATTTCCTCGGGTCAAGGCTGGCTCTGTAGCGCACAGACAAGCAGACAGACAGACAGCCACAAACATAACTGCCACTCTCCCTGGGCCATCTTCTCTTGACTTGTTTGCATACATTTCCATGTCATTTGCATGACAGCATGGTGTTTGCATGCTCCCCACCCCCCCACCCCCATGTGCCCTTTTGCATTGTGGTATCTGTGGGACTGGGTTGGGCATCCCTGCCCTGCTGGGCTCCTGTTGGGACAGACTGCTGACCTCCTGGCTCTACAG
Seq C2 exon
CGGATATCGCCCGCAGCATGGGGGCCAAAACGGTCATTGCCATCGACGTGGGAAGCCAGGATGAGACGGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAACGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCCTGGCGTATGTGTCCTGTGTGCGGCAGCTGGAAGTTGTCAAGTCTAGTTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977:ENSRNOT00000001298:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=PU(88.6=97.5)
A:
NA
C2:
PF0173417=Patatin=PD(2.4=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]