GgaINT0125241 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2081830-2085127:+
Coord C1 exon
chr17:2081830-2081946
Coord A exon
chr17:2081947-2084978
Coord C2 exon
chr17:2084979-2085127
Length
3032 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
GACCTTTTTTTCCCCACTAGCTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
GCTCTCTGTGGAGGTACATCCGTGCCAGCATGTCTCTCTCTGGGTACATGCCCCCGCTCTGCGACCCAAAGGATGGGCACCTCCTGATGGATGGAGGTTACGTCAACAACCTTCCTG
Seq A exon
GTAGGTGTCCACGTGGGGTGGAGGGAAGCTGCTGAGAACACATCGCAGTCTGCAGATCTGTTCCCCTCATGATTGCTTTCCAAAAAAAGGAGCAAGGATCAACACTGCAGCCACCTGTAACCTCATGGTGGTTACCAGCAGTCGCTGTTCTCAGTTTCCTTGGTGTTTGTGTTGCTGTGGCTTTATTAAGGCTGTCCCTTGTTATGGACTATTTCCTGATACTCACATTCCAAAAACATAATTCCAAGCTCATTTTGAATTTATTATAGTGGTCACTGCAAGGAGAGAGCAGAAATTAACTGCAAGCACGTAGTCCTTGTTTCTTTTTTGAAAAGTATCACTGGAATAGCAAATGGTTCTGAGAAAGCAAGAGTATTAATGGTTCATTATTCAGCCTGGTGACTGTGGTAGGAGAACATACTGGATCAGAGCACTCGCTGGAGGATTGTTGGAAGTAAATGGTAGTTGGTATTGAAAGCAGCCAAGTAACATTATTTTTTCTTTATTGTCCAGCTGTGAGTTTTCACTGTAATGCAGCCGTAGAATTGAAACAGTATTTCAGTGGTTCTGTTAAATCAGATGCCAATGTGTGTCTTGGAGGAGCTGGAGGGATGGATGAGCTGCGGAGAGGGGGCAGCCCCGTGCCAGCATGGGGCTCCTGTGCCAAATGTCAGCTTTGTCTTTGCTGCCAGAGGGGATGGGGATGGTGGCTGAGCTGTGTGCTCAGAGCCTGATGGATTCTGCTTGTCTTGGTTAGAATCATGGAATCATTGAGGTTGGAAAGGACCACTGGGATCATCAAGTCCAGCCATCATCCCATCCCCACTGTGCCCACTGACCGTGTCCCTCAGTGCCACATCTATTTTTTTCATGGACACCTCCAGGGACGGTGACTCCACCACTCCCTGGGCAGCTGTGCCAATGCCTGACTGCTTTTTTCAGGGAAGAAATGTTTCCTAACACCCAACCTGAACTTCCCCTGGCACAATGTGAGGCCATCACCTCTTGTCCTGTTACCTGGGAGCAGATGCTGACCCCACCTCACCACAACCTCCTTTCACGTGTCTGTAGAGAGCACTGAGATCTCCCCTGAGCTCCTCTTCTCCACACTGACCCATCCCAGCTCCCTCAGCTGCTCCCCATCACACTTGTGCTCCAGACCCCTCACAGCTCCATGCCCATCTCTGGACACGCTCCAGGGCCTCCACGTCTGCACTGCAGTGAGGGCCCAGCACTGAGCACAGCACTGAGGTGCGGCCCCACCAGTGCCGTACAGAGGGACGATCCCCTCCTGCTCCTGCTGGCTGCACTGCTGCTGACACAAGCCAGGATGCCGTGGGCCTTCTTGGCCACCTGGGCACACTGCTGGCTCGTGTTCTGCTGGCTGTCAGCTCACACCCAGAGCCTTTTCCTCCATGCTGCTTGCCAGCCACTCTGCCCCAGTCCTGTAGTGCTGCATGGGGCTGATGTGACCAAAGTGCAGCACCGAGCACCTGCTCTTGTTGAAGCTCATACAACTGGATTATTCTGCTCCCCATCTCTGCCTTTCAGCTCAGGGGAGTGAGTGCCCTGAGGATGGATAGCTGCTCGCGTGGGGCAGAGGTGGAATTGGGGTGTAGGAAGGCTGATGTGGAGCAAGAGTTGAACCCAAAATGGACCCAGTTGTGTGAATTCACTCGTGCTTATTTGGGATGCTTTTTATGGCAGGGCTGTGGTCATGGTCAGGAAGCACTGGAAGGTAGGTGAGTCATGAAAGTGGCCATGCCAAGAGAGATGTACAGTGTCAGTGCAGTTTGTGTACAGATCGGAGGAAATCCAAGTTAGAGACTACATCTGAGCATCCCAAGTCCTTTAGGTGTTCAAGACAAACCCAAACTCTATTTTCTTATCAGGGCAGTGTTTGCCTAAAAAACAGAAATAGAAATAACACAAAGTAGACCCCCCCCCCAATTTTGCACTGACTTTGCAGTGTGTGACTGTGTAAGCAAAAGCATGAATTGCAAATTGAGATGCTGTTTATTGGAAAGTGCACAAAGTGTATGTGCAAGTGACACAAAGTGGAAAAGATACAATAGACTGAACCAGCCCAGGAATATAAATCCAAGTTACAGAACAGATCTGATTTAAATATGTATCTAAATTAAGCACATAAATTGGCTCTTCAAAGCTGTGGTTTTCCTACGCATAACTATTCTAGAAATTGCAACTATCTTGGACTCTGGGGGCGTGGAGGAAATGTAATGCATTCTGTAAGGTGTGTGTCCTTCTCTCCCCTCCTTTGGCACTTTCCTATATTCTCACCCATATCCAAAGGCTGCAGCTCGTTCTCTTTCTACCGACCTTGAAGTGGGAGGTGTTGCCTCATTTCTCTCCAACTTCAAATATGAGTCTTCCTCTTGGATCCAAAGCTTTCTGCAGACTGAAATCCTCCCAGCCTCTCCTTGCTGTCTGCTTCCTTTGCTGCTCCTTTTCTTCATCGTCTTCTCTCTGCGGGGTTGCACCTCTGCACTGCTGACTCCTCTTTATGGCCATCACTGCTTGTTCTCTCTCCAGGTCCTCCAGGTCTTTGTTCTCATGGGAACCGCCACGCTTTCATGTTGCCCCCAGTTGCACCAGACCAGGTGTTTGTGCTGTGCTTCTCTTCTCCCTGCTTGCAGGTTTGCTGCTGCCTTCACATTGGCTCTGGTGCCATAATGGTGCCAGAGTGAGTCGGGTCAGCCTGCCCTCCTGGGGAAAACTTCCCCACTTGGTGGTGTTCACCAGGAGTTCAGCAGTGTGGCCTCGCCCTGCTGTTAAGTGGGGGCTCTGTGCTGCAGACTGAGATCTCACAGTTGGAATGGACCTGGGGAAGTGGTGTCGTGACAGATGTGCTGCAAACGCTTACATCTGGAGCTGTTCAAAGAGATGCCCATGGTGTGCCCCATGTCAGGTTCTGTCTTGCTGAGCAGTACCTACGTAAGCTGTGTCTGTGCAGCACCAGAGTTGACATCGTTGTTGGAAGTGTACTGATGTGACCTTTTTTTCCCCACTAG
Seq C2 exon
CTGATGTGGCGAGGTCCATGGGTGCAAAGGTGGTGATAGCAATCGATGTGGGGAGCCGGGATGAGACCAACCTCACCAACTACGGTGACTGCTTGTCCGGCTGGTGGCTGCTGTGGAAGAGGTGGAATCCACTGGCTGAGAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
NA
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]