BtaINT0114833 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105670560-105671295:+
Coord C1 exon
chr11:105670560-105670676
Coord A exon
chr11:105670677-105671146
Coord C2 exon
chr11:105671147-105671295
Length
470 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCAGGCCACCTCCTCCCCAGCGG
3' ss Score
4.53
Exon sequences
Seq C1 exon
GATCACTGTGGAGGTACGTGCGTGCCAGCATGTCCCTGTCGGGCTACATGCCCCCACTCTGCGACCCCAAAGATGGGCACCTGCTGATGGATGGGGGCTACATCAACAACCTCCCAG
Seq A exon
GTACTGGGTGGGTGGGGAGGGGCACCCACCTGCCTTGACCCCATGGCTCCGTGTGCCCGATGGCGGGGCAGTGCAGGAGGCATGCAGACACACTCCCAGCAGATGGCTCCGTTGGCGGCTCCGCAGTGCTCAGAGCTCAGAGCAAGGCCAAGTGGCGGTCGGTGCAATTAGGGCCCATCTGTGCCCACAGCGAGAACTAACAGCCTGCAGGTGTCAGGGCTGCTGTGGGCACAGCCCCTCCTGGGGCACGCCAGCCACCTGTTGGACAGCTCTACACTTGCCAGGGCCTGCACAGGCCCCGGTGTGACAGTGGAGAGGAGACCCGCCCTGCAGGCCCACGTGCTCCCCCAGCGCCTCTCAGGCAGGCTCTGCCCCCACCCCTAGCTCTACCCCAGCCTCCCCTCAGCTGTGCTCCCACCCAGGGCTCTGCACACCTGTCCCCATTGGTCACCAGGCCACCTCCTCCCCAG
Seq C2 exon
CGGATGTGGCCAGGTCAATGGGGGCAAAGGTGGTGATCGCCATTGACGTGGGCAGCCGGGATGAGACAGACCTCACCAACTACGGGGATGCGCTCTCGGGATGGTGGCTCCTGTGGAAGCGCTGGAATCCCTTGGCCACGAAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
NA
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACTGTGGAGGTACGTGC
R:
ACCTTCGTGGCCAAGGGATTC
Band lengths:
262-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development