BtaEX0027747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105670560-105671786:+
Coord C1 exon
chr11:105670560-105670676
Coord A exon
chr11:105671147-105671295
Coord C2 exon
chr11:105671634-105671786
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCAGGCCACCTCCTCCCCAGCGG
3' ss Score
4.53
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GATCACTGTGGAGGTACGTGCGTGCCAGCATGTCCCTGTCGGGCTACATGCCCCCACTCTGCGACCCCAAAGATGGGCACCTGCTGATGGATGGGGGCTACATCAACAACCTCCCAG
Seq A exon
CGGATGTGGCCAGGTCAATGGGGGCAAAGGTGGTGATCGCCATTGACGTGGGCAGCCGGGATGAGACAGACCTCACCAACTACGGGGATGCGCTCTCGGGATGGTGGCTCCTGTGGAAGCGCTGGAATCCCTTGGCCACGAAGGTCAAG
Seq C2 exon
GTGCTGAACATGGCTGAGATCCAGACACGCCTGGCCTACGTGTGCTGTGTCCGGCAGCTGGAGATGGTGAAGAGCAGCGACTACTGCGAGTACCTGCGCCCTCCGATTGACAGCTATGGCACCCTGGAGTTCAGCAAGTTTGATGAGATTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
PF0173417=Patatin=PD(2.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACTGTGGAGGTACGTGC
R:
AACTTGCTGAACTCCAGGGTG
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development