GgaEX1044858 @ galGal3
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2081830-2086700:+
Coord C1 exon
chr17:2081830-2081946
Coord A exon
chr17:2084979-2085127
Coord C2 exon
chr17:2086548-2086700
Length
149 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTTTTCCCCACTAGCTG
3' ss Score
7.94
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GCTCTCTGTGGAGGTACATCCGTGCCAGCATGTCTCTCTCTGGGTACATGCCCCCGCTCTGCGACCCAAAGGATGGGCACCTCCTGATGGATGGAGGTTACGTCAACAACCTTCCTG
Seq A exon
CTGATGTGGCGAGGTCCATGGGTGCAAAGGTGGTGATAGCAATCGATGTGGGGAGCCGGGATGAGACCAACCTCACCAACTACGGTGACTGCTTGTCCGGCTGGTGGCTGCTGTGGAAGAGGTGGAATCCACTGGCTGAGAAAGTCAAG
Seq C2 exon
GTGCCGAACATGGCAGAGATCCAAACACGGCTCGCGTACGTGTGCTGCGTGCGGCAGCTGGAGATGGTGAAGAGCAGCGACTACTGCGAGTACATCCGGCCACCCATCGACCGCTACGGCACGCTGGATTTTGGGAAGTTTGATGAGATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'37-39,'37-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
PF0173417=Patatin=PD(2.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCCGTGCCAGCATGTC
R:
ACTTCCCAAAATCCAGCGTGC
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]