MmuEX0036063 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25050855-25052184:+
Coord C1 exon
chr2:25050855-25050971
Coord A exon
chr2:25051601-25051749
Coord C2 exon
chr2:25052032-25052184
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGCTACCTTTTTCTCTGTAGCGG
3' ss Score
7.92
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
GCTCTCTGTGGAGGTATGTCCGTGCAAGCATGTCCTTGTCAGGCTATATGCCCCCACTCTGCGACCCCAAGGATGGACACCTGCTGATGGATGGTGGTTACATCAACAACCTCCCAG
Seq A exon
CGGATGTGGCAAGATCCATGGGGGCAAAGGTTGTGATTGCCATCGATGTTGGCAGCCGGGACGAGACAGACCTCACCAACTATGGCGATGCCTTGTCTGGATGGTGGCTGCTTTGGAAACGCTGGAACCCCTTGGCTACAAAAGTCAAG
Seq C2 exon
GTGTTGAACATGGCAGAGATTCAGACTCGACTGGCCTATGTGTGCTGCGTCCGGCAGCTGGAGATGGTGAAGAACAGCGACTACTGTGAGTACCTGAGGCCTCCCATCGACAGTTACCGCACCCTGGACTTCGGCAAATTTGATGAGATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-'64-73,'64-69,66-73
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
PF0173417=Patatin=PD(2.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTATGTCCGTGCAAG
R:
AATTTGCCGAAGTCCAGGGTG
Band lengths:
250-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types