GgaEX1044858 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1682160-1689768:+
Coord C1 exon
chr17:1682160-1682276
Coord A exon
chr17:1685309-1685457
Coord C2 exon
chr17:1689658-1689768
Length
149 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTTTTCCCCACTAGCTG
3' ss Score
7.94
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GCTCTCTGTGGAGGTACATCCGTGCCAGCATGTCTCTCTCTGGGTACATGCCCCCGCTCTGCGACCCAAAGGATGGGCACCTCCTGATGGATGGAGGTTACGTCAACAACCTTCCTG
Seq A exon
CTGATGTGGCGAGGTCCATGGGTGCAAAGGTGGTGATAGCAATCGATGTGGGGAGCCGGGATGAGACCAACCTCACCAACTACGGTGACTGCTTGTCCGGCTGGTGGCTGCTGTGGAAGAGGTGGAATCCACTGGCTGAGAAAGTCAAG
Seq C2 exon
GAAGTGGGATATCAACATGGGAAGACTGTGTTTGGTGTCTGGTCCAGGAGCGGCGTCCTTGACAAGATGCTACGAGACAGACAAGAGACACACAAAACCAAAACTTCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.324
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
PF0173417=Patatin=PD(2.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGTGGAGGTACATCCGT
R:
TCAGAAGTTTTGGTTTTGTGTGTCT
Band lengths:
226-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]