RnoEX0067745 @ rn6
Exon Skipping
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2258676-2259957:+
Coord C1 exon
chr3:2258676-2258792
Coord A exon
chr3:2259392-2259540
Coord C2 exon
chr3:2259805-2259957
Length
149 bp
Sequences
Splice sites
3' ss Seq
AGGCACCTTTTTCTCTGTAGCGG
3' ss Score
6.75
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
GCTCTCTGTGGAGGTATGTCCGTGCAAGCATGTCCTTGTCAGGCTACATGCCCCCACTCTGTGACCCCAAGGATGGACACCTGCTGATGGATGGCGGTTACATCAACAATCTCCCAG
Seq A exon
CGGATGTGGCAAGATCCATGGGGGCAAAGGTTGTGATTGCCATCGATGTTGGCAGCCGGGACGAGACGGACCTCACCAACTACGGTGATGCTTTGTCTGGATGGTGGCTGCTTTGGAAACGCTGGAACCCCTTGGCCACAAAAGTCAAG
Seq C2 exon
GTGTTGAACATGGCAGAGATTCAGACACGACTGGCCTATGTATGCTGCGTCCGGCAGCTGGAGATGGTGAAGAACAGCGACTACTGTGAGTACCTGAGGCCTCCCATCGACAGCTACCGAACCCTGGACTTCGGCAAGTTTGATGAGATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190-'42-48,'42-46,45-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
PF0173417=Patatin=PD(2.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTATGTCCGTGCAAG
R:
TCAAACTTGCCGAAGTCCAGG
Band lengths:
253-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]