MmuINT0123205 @ mm10
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25050855-25051749:+
Coord C1 exon
chr2:25050855-25050971
Coord A exon
chr2:25050972-25051600
Coord C2 exon
chr2:25051601-25051749
Length
629 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GGCTACCTTTTTCTCTGTAGCGG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GCTCTCTGTGGAGGTATGTCCGTGCAAGCATGTCCTTGTCAGGCTATATGCCCCCACTCTGCGACCCCAAGGATGGACACCTGCTGATGGATGGTGGTTACATCAACAACCTCCCAG
Seq A exon
GTACTGCAGAGGACTCGGGAGTGCCCCCATGCTGGTACATAGTTCTTTGGTCATTCTGCCCTGTGGCTGTCTGCCACAACCGCCTCCACACCAGGAAGGCTGGGGTGGTACACGTTTTCCTTGGAGTATGCCAAGAGAAAATGTCAGGTTGGCATCAGTTGCTAGAGAACACATGTGAGTGTGCCCATGCATGCGCATGCGCACAGCATGCCCCTAGCATATGGCTCTGCCTGTTAGCACAGCAGCAACAGAACAAAGGCCAAGGAGACAAACCAGGGGCAATTGATTTCCATCTGTGCCCACAGTTGGAAACTAAGAGCCCGCAGGTGCCACGTGTGCCATGAGGCCATATCTACTACCTGTTGGCTACATGCTCAGAAGGGCTCCAACACAGTTCTTTGCTCATGGCTGTACACAAGCTGAGACATTTGATCCTGCCACCATAGGCCCAGGAAGAATACTAGAGAAGGTCCCCTGGTGGAGCCAGCAAGAGAAACAAAAGCCCTCTTGGTGCTTAGAAAAGCAGGGTCTGCTTCTCATCAGTTTTTCCCATTTCTCCTGGAATGCTGCCCCATGCCCTGGTGCTACATTCTTGACCTGGGGTAACTAGGCTACCTTTTTCTCTGTAG
Seq C2 exon
CGGATGTGGCAAGATCCATGGGGGCAAAGGTTGTGATTGCCATCGATGTTGGCAGCCGGGACGAGACAGACCTCACCAACTATGGCGATGCCTTGTCTGGATGGTGGCTGCTTTGGAAACGCTGGAACCCCTTGGCTACAAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833:ENSMUST00000045295:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
NA
C2:
PF0173417=Patatin=PD(2.4=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTGGAGGTATGTCCGT
R:
TGACTTTTGTAGCCAAGGGGT
Band lengths:
262-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types