BtaINT0114800 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17643429-17645642:+
Coord C1 exon
chr7:17643429-17643545
Coord A exon
chr7:17643546-17645340
Coord C2 exon
chr7:17645341-17645642
Length
1795 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CTGACTCCCTGGCCCCACAGCGG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GCTCCCTGTGGCGATACGTGCGTGCCAGCATGACTCTCTCGGGCTACCTGCCGCCGCTGTGCGACCCCAAGGATGGGCACCTCCTCATGGACGGCGGCTACATCAACAACCTGCCAG
Seq A exon
GCAAGTAGCCACCTGCTCATCCCCCTGTGTGGACACACGGGCGAGCTCACAGCTGGTATGTGCATGTGTAGGATGCACGCATGTGCTGTGCTGGACATGCACATACACACACAAATGGGTGGGGTGCCTCCACCACCAGCTTTCTCTCACACCTGCTGACTTGAAGCATGCAGACAAGAGACAGGGGCATTTGCAACTTAAAATTCCATACACACAGAAGCGTGCAAACACAAGTAGACACCTATGCTGGCTACACAGACGCTTGAGGTCCCATAAGCCAGGGATCCACACAGTTCGCTTGCACACCAAGTTCAGCCCCCTGCCTGATTTTATAAATAAAGTTTTATTGGCACACAGCCACTCCTGGTCATTAACCTTTTGTCTGTGGCTGTGTCTGTGCAGCAGAGTCAAATAACTGCATCAGAGACCACACGGCCTAAAAAGCCAAAATAATTTTTCCTCTGGCCTTTTATGGTTTGCCAACTCTGGCACAGGCAGTCCAAACAGATACATGCACTCACACAACCACATTCACGTGAGCAGGTGTGTACAAACTCTGATGGACAGGCATGCTTGGACGCACAAGGAAACATACACAGACGTTGATCTAGGGCCATGTGAAAGGAATACAAACAGTACTGGGTGTGTGTACAGAGGTATACCCCACCCAGAGGTGGGTGTATTCACAAACATACAGACAAGAGTTGCATATATCTGATAAGGGTGCATACGGCACGCGTGCACACACAAAAACTTGTGAGGGACACAAGCAGTCTGATGGAGACTCAGGTGTCTTTGGGGAATGGGCGTGGCTATAGGACCTGTCCATAGGCACCCCCACACACAGAGACCCTCAGTGGGGCACACAGACTGTGACCACAGCACCCCACACACACTGTGCCATCACCCCACCCCTTCCCCTATCCATCCTGCTCCCCTGAATCTCCTTGAACCAGCTCTTTGTTGTCTTGCCTCAGTCTTGAGGTCTCTTATTCTACCTGGATTCTCTATCCTTCCATATCTCTGGCCACTGATCTCTGTCTCTTTCTCCCACCTGTCTCTGTTGCTATCTCTGGTCCCCTGTGTTTCTCTTCCCTTGGCTGTGTCTCCTGGTATCTTTTTTTGTTTTTAGCTGCTCTGGGTCTTCATTGTGGTATGTGGGCTCTTTAGTGAGGTATTTAGACTTTCTCTAGTTGCAGTGCAATGGGGCTTCTCCAGTTGTGGCACAAGGGCTTAGTTGCCCTGCAGCATGTGGGATCTTAGTTTCCTAACCAGGAATCGAACTCATGTCCCTTGCATTGGAAGGTGGATTCTTAACCACTGGACCAACAGGGAAGTCCCTCTCTGGGTGTCTTTATTCCCACATCTCCCTGTCAGTTTCCTTCCACCACTGTCTCCCTGCATCTCAGACCCACTGTCTGTTTCCATGACTGATCCCTTCACCTTTCTTTCCTGATGTCCTTACTATACTCTCTCTCTCTGTCACTCTCCTTCCATGTCTCTGTTCCCCATGCATCTGACTTCGTGTGTCTTTCCACAGTGATTTTGTCCCTGTGCTCCATCTTCTCCATTCCCTTGGCCCTGGTTCCCCAAACCCCAAAGCGCCAACACCCAACCCCACTTCCCACACATCATCAGCCTCTACATCCATCCATACATACCCCTTTGCATGCCTACATGTCGTTCACATGGTTTTTTAGCATGACCATGTGAGTGATGGTGTTTGTGGGACTGGATTGATCTTCCCTGCCCCGGTACTGGTGGGGAGCCCCCAGCTGACTCCCTGGCCCCACAG
Seq C2 exon
CGGACATCGCCCGCAGCATGGGTGCCAAGACAGTCATCGCCATCGACGTGGGGAGCCAGGACGAGACAGACCTTAGCACATACGGGGACAGCCTGTCTGGCTGGTGGCTTCTGTGGAAGCGGCTGAATCCCTGGGCAGACAAGATCAAGGTTCCAGATATGGCAGAGATCCAGTCTCGCCTGGCCTACGTGTCCTGCGTGCGACAGCTGGAGGTTGTGAAGTCCAGCTCCTACTGTGAGTACCTGCGCCCACCCATCGACTGCTTCAAGACCATGGACTTCGGGAAGTTCGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=FE(86.7=100)
A:
NA
C2:
PF0173417=Patatin=PD(2.6=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTCTCTCGGGCTACCTG
R:
CTTGAAGCAGTCGATGGGTGG
Band lengths:
357-2152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]