DreEX0056683 @ danRer10
Exon Skipping
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45183595-45196813:-
Coord C1 exon
chr1:45196744-45196813
Coord A exon
chr1:45187956-45188072
Coord C2 exon
chr1:45183595-45183743
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCCCCTCCCGGTGTGGTAGGCT
3' ss Score
5.48
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GACTTGTGGCTGCCTTACTTCAACGTGACCACAGATATCACAGCTTCTGCTATGCGTGTTCATAAAGATG
Seq A exon
GCTCCCTGTGGCGCTATGTCAGGGCGAGCATGACCCTTTCCGGGTACCTGCCACCCCTCTGCGACCCTAAAGATGGAAACCTGCTCATGGATGGAGGATACATCAACAACCTGCCAG
Seq C2 exon
CGGACATTGCTCGTACTTTGGGCACAAAAACTGTCATTGCCATTGATGTGGGCAGCCAGGATGAGACTGATCTCTGTAACTACGGTGACTGTCTTTCTGGCTGGTGGCTGCTATGGAAACGAATCAACCCGTGGGCAGAGAAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PU(29.0=75.0)
A:
PF0173417=Patatin=FE(23.4=100)
C2:
PF0173417=Patatin=PD(2.4=8.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTGGCTGCCTTACTTCA
R:
CTTCACTTTCTCTGCCCACGG
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]