GgaINT0004591 @ galGal3
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60658353-60659416:+
Coord C1 exon
chrUn_random:60658353-60658422
Coord A exon
chrUn_random:60658423-60659299
Coord C2 exon
chrUn_random:60659300-60659416
Length
877 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CATTCCTCTCCCTCCGGCAGGCA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GACCTTTGGCTTCCTTACTTCAACGTCACAACAGACATCACGGCCTCAGCCATGCGGGTGCACACGGATG
Seq A exon
GTAAGAGCCCCCCAGAGAACTGGGGACGCTCCTTGGCACCACCATATCTCCTCACTGGAACCCCAAAAACGTTGTCACTGTCACCTGGACAGTGGTGGTGTCCCAGTGCTGGTGACCAGCAAGGCTCAGCTCCACACCGGAGCCTGGCGATTTCCCATGTCCCAGGTGGGGACAGGGACAGATCTGGGATGCAGAGCTGCAACCCACCCCAGTGTGCACATCTCCTCTAACACGTCCGCTCACCACTAACCCCAGTAACCCTCACTCACAGCATGGGGGTGTGGGGCTGTCCTGCTGGGGACACTGCGGGGGCGGTGGGGACAATCTGGTGGTGGTGAAGGGGATGTAACGGTGGGGACGATGTGGTGATGGTGATGGAGATGTCATGATGGGGATAGTATGTTGGTGGTGATGGGGACAACACAGTGGCGGTGGTGGGGACATCATGGTGAGGACCATGTGCTGATGGTGGTGGGGTCCGTGTGGTGGCAGTGATGGGGGCAATGCAGTGGTGGTGATGGGGACATCATGATGAGGGGGACAATGTGGCGATGGTGGTGGGGACTGTGCGGTGGCGGTGATGGGGACGATGCGGTGGCTGCCCCTCATCCTTGCCTGGTGCCAGAGCTCACCTGGGACATTGAGCCGTCCATGGGGCGAACGCGGTGGCTTGTAGGCAGCCTGGCTCCCTCCCCACCCTCTCCTCTAACACCAACTAATCCCCGCTCACCACCCCTAATCCTTCTCCAGCCCACTGTGGACAGAGTGCTTTCCCCACCACGACTCTCTCCCGGTGCTGAAATCACATCACCTGCCCCGGGGCTTTGTGCCCATCCCACCCCCCCCATGCCCATGACCATTCCTCTCCCTCCGGCAG
Seq C2 exon
GCAGTCTTTGGCGTTACATCCGAGCCAGTGCCTCCTATACCCCCTACCTGCCTCCGCTCTGCGACCCCAAGGACAGCCACTGCCTCGTGGACGGCTGCTATGTTAACAATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
NA
C2:
PF0173417=Patatin=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGGCTTCCTTACTTCAACG
R:
GGACATTGTTAACATAGCAGCCG
Band lengths:
182-1059
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]