BtaALTA0023075-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26717375-26717796:-
Coord C1 exon
chr2:26717759-26717796
Coord A exon
chr2:26717453-26717509
Coord C2 exon
chr2:26717375-26717452
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TTGTTTTGTTTTCTCTTCAGAAA
3' ss Score
10.6
Exon sequences
Seq C1 exon
GAGCAAAAAGATTGTCCTTGATTTTTCCCTATTTAAAG
Seq A exon
AAATTTATGAAAAATCTTTGCTGTTTTAATGTGTTTGCCTGAAACTATTTTACTCAG
Seq C2 exon
ATTGAAGTATTGACGCCATGGGAATAAAGGTTCAGCGTCCTAGATGTTTTTTTGACATCGCCATTAATAATCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789-4-4,4-3,4-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016016=Pro_isomerase=PU(6.0=47.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAAAAGATTGTCCTTGATTTT
R:
CAGGTTGATTATTAATGGCGATGTCA
Band lengths:
116-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development