BtaEX0028113 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26700817-26736067:-
Coord C1 exon
chr2:26735937-26736067
Coord A exon
chr2:26716531-26716638
Coord C2 exon
chr2:26700817-26701030
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTAATTTTTCTTCTCTTTAGGTG
3' ss Score
11.31
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCCCTCCACGCCGGGCCTGGGTTGTGGGGGGAGGGAGTCGGTTAGTGGTCTTTAGCGCCTTTTCTGGCGGCGGTAGATTTGAAGCGCTTTAAAGGACCGGACCCCGGGAAGAGGAGACTGGACTGGTGCAA
Seq A exon
GTGAAAAGGGGACAGGGAAATCAACTCAGAAGCCATTACATTATAAAAGTTGTCTCTTTCATCGAGTTGTCAAAGACTTTATGGTTCAAGGTGGTGACTTCAGTGAAG
Seq C2 exon
CTAAGAAAGAAGAAAAGAAAAGGCATAAGTCATCTTCTTCCTCCTCCTCATCATCCAGTGACTCAGACAGCTCAAGCGATTCTCAGTCCTCTTCTGATTCTTCTGATTCTGAAAGTGCTTCTGAAGAGAAGTCAAAAAAAAGAAAGAAGAAACATAGGAAAAATTCTCGTAAACACAAGAAAGAGAAGAAGAAGCGAAAGAAAAGCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789_MULTIEX1-2/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0016016=Pro_isomerase=FE(21.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGCTTTAAAGGACCGGA
R:
TCGCTTCTTCTTCTCTTTCTTGTGT
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development