MmuEX6101970 @ mm9
Exon Skipping
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69570437-69571290:+
Coord C1 exon
chr2:69570437-69570511
Coord A exon
chr2:69570875-69570982
Coord C2 exon
chr2:69571246-69571290
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATGACTGTTTCTTTCTCCAGGTG
3' ss Score
12.1
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGGAAGAGTTGTCTTTGAATTATTTTCCGATGTATGTCCCAAAACGTGTGAGAACTTTCGCTGCCTTTGCACAG
Seq A exon
GTGAAAAAGGGACAGGGAAATCAACTCAGAAGCCATTACATTATAAGAGCTGTCTCTTTCATAGAGTTGTCAAGGATTTCATGGTTCAGGGTGGTGACTTCAGTGAAG
Seq C2 exon
GGAATGGAAGAGGAGGAGAATCTATTTATGGAGGATTCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-'8-16,'8-14,9-16=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(15.1=100)
A:
PF0016016=Pro_isomerase=FE(21.7=100)
C2:
PF0016016=Pro_isomerase=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTGTCTTTGAATTATTTTCCGA
R:
ATCCTCCATAAATAGATTCTCCTCCT
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: