HsaEX1029047 @ hg38
Exon Skipping
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169604187-169607148:+
Coord C1 exon
chr2:169604187-169604261
Coord A exon
chr2:169606039-169606146
Coord C2 exon
chr2:169607104-169607148
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTTTATCTCTATAGGTG
3' ss Score
11.82
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGGAAGAGTTGTCTTTGAATTATTTTCTGATGTGTGCCCCAAAACATGCGAGAACTTTCGTTGTCTTTGTACAG
Seq A exon
GTGAAAAGGGGACCGGGAAATCAACTCAGAAACCATTACATTATAAGAGTTGTCTCTTTCACAGAGTTGTCAAGGATTTTATGGTTCAAGGTGGTGACTTCAGTGAAG
Seq C2 exon
GAAATGGACGAGGAGGGGAATCTATCTATGGAGGATTTTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-'15-15,'15-12,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.006
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(15.1=100)
A:
PF0016016=Pro_isomerase=FE(21.7=100)
C2:
PF0016016=Pro_isomerase=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTATTTTCTGATGTGTGCCCC
R:
AAAATCCTCCATAGATAGATTCCCCT
Band lengths:
98-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains