DreEX0057410 @ danRer10
Exon Skipping
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3535442-3536031:+
Coord C1 exon
chr6:3535442-3535516
Coord A exon
chr6:3535779-3535886
Coord C2 exon
chr6:3535987-3536031
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTTTCATCTTTGCATCCAGGTG
3' ss Score
10.1
5' ss Seq
AAGGTGTCA
5' ss Score
0.87
Exon sequences
Seq C1 exon
CGGGCCGTGTGGTCATTGAGCTTTTCTCTGATGTTTGCCCCAAAACATGTGAAAACTTCCGCTGCCTGTGCACAG
Seq A exon
GTGAAAAAGGAGTTGGCAAGACTACTCAGAAACCATTGCATTACAAAGGAACTCCTTTCCACAGGATAGTGAAGGATTTCATGATACAAGGAGGAGATTTCAGTGAAG
Seq C2 exon
GGAATGGCAGAGGTGGTGAATCTATATATGGAGGTTTCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(15.1=100)
A:
PF0016016=Pro_isomerase=FE(21.7=100)
C2:
PF0016016=Pro_isomerase=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCGTGTGGTCATTG
R:
AGAAACCTCCATATATAGATTCACCA
Band lengths:
114-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]