BtaEX0028110 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26717759-26735626:-
Coord C1 exon
chr2:26735526-26735626
Coord A exon
chr2:26719013-26719062
Coord C2 exon
chr2:26717759-26717796
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGCCTCCAAATGTAGAGA
3' ss Score
7.62
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCGCACAAGCTGTAATATGGCGGCAGCGACGGTGGCCTGAACTCCAGGGAGCCGGGGTGATTTTGATGCTTCAAAATCGTAAGACCGAGCACGAGTGCGGG
Seq A exon
AGAATTTAAGAAGGCCTGCACAAGTTATTTAGAAGATAAAAGATAATCAG
Seq C2 exon
GAGCAAAAAGATTGTCCTTGATTTTTCCCTATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789-'2-1,'2-0,3-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACAAGCTGTAATATGGCG
R:
ATAGGGAAAAATCAAGGACAATCTTT
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development