BtaALTA0023105-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3976477-3976908:-
Coord C1 exon
chr25:3976805-3976908
Coord A exon
chr25:3976635-3976637
Coord C2 exon
chr25:3976477-3976634
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGACTCTGACCTCCCTCCAGCAG
3' ss Score
7.39
Exon sequences
Seq C1 exon
TCACAGCCTGGGCAGCCAGTACCAGAGCCTGCGGCAGAAGGCAGCTGGGAGCAGAAAGGCGCTCCAGGAGCAGCATGAGGTGCTGAAGGCAGAGAGCTCTGGAG
Seq A exon
CAG
Seq C2 exon
ATGCCTCGGACCTGCAGGGCCGCCAGCTGCTGGCCGGCTTGGACAAGGTGGCCAGCGACCTGGACCGGCAGGAGAAGGCCATCACGGCCATCCTGCGGCCGCCGCTGGAGCAGGGCCGGGCTGTGCAGGACAGCGCCGAGAGGGCCAAGGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-18-18,18-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGAGCAGCATGAGGT
R:
CTGGCCACCTTGTCCAAGC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development