BtaALTA0023105-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3976477-3976908:-
Coord C1 exon
chr25:3976805-3976908
Coord A exon
NA
Coord C2 exon
chr25:3976477-3976634
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTCTGACCTCCCTCCAGCAGATG
3' ss Score
7.69
Exon sequences
Seq C1 exon
TCACAGCCTGGGCAGCCAGTACCAGAGCCTGCGGCAGAAGGCAGCTGGGAGCAGAAAGGCGCTCCAGGAGCAGCATGAGGTGCTGAAGGCAGAGAGCTCTGGAG
Seq A exon
NA
Seq C2 exon
ATGCCTCGGACCTGCAGGGCCGCCAGCTGCTGGCCGGCTTGGACAAGGTGGCCAGCGACCTGGACCGGCAGGAGAAGGCCATCACGGCCATCCTGCGGCCGCCGCTGGAGCAGGGCCGGGCTGTGCAGGACAGCGCCGAGAGGGCCAAGGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-18-18,18-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGAGCAGCATGAGGT
R:
CTGGCCACCTTGTCCAAGC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development