DreALTA0021111-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36325829-36326174:-
Coord C1 exon
chr3:36326077-36326174
Coord A exon
NA
Coord C2 exon
chr3:36325829-36325986
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
GCTTCTTCCTCCAGGCGCAGATA
3' ss Score
1.34
Exon sequences
Seq C1 exon
TCTGATAAACCAACATAAAAGCATCAAACAGAAAGTCGCCAGCAGCAAAACTGCACTACAGGCCCGACTGGCAGAGCTCAAGAAGGAGAGTACAGGAG
Seq A exon
NA
Seq C2 exon
ATAAGCAAGAGCAGCAGTGCCGTCAGCTGATGGCAGGACTGGATAAAGTTGTCAGCGATCTGGATAAGCAGGAGAAGGCCATTTACTCTCGTGTGCGCCCTCCACTGGAGCAGACGCGTCCTGTGCAAGACAGCGCTGATAGGCTGCAGGACATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-18-18,18-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAACAGAAAGTCGCCAGCA
R:
GGCACTGCTGCTCTTGCTTAT
Band lengths:
96-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]