BtaALTA0024054-8/8 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012736 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr11:98407514-98408308:-
Coord C1 exon
chr11:98408089-98408308
Coord A exon
chr11:98407614-98407731
Coord C2 exon
chr11:98407514-98407613
Length
118 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TATGTCTCCTGCATTGGCAGGCG
3' ss Score
6.6
Exon sequences
Seq C1 exon
GTGGCAGGTCTGGGAAACCCTGGACTTCCTGGCACGCGGCACAGCGTGGGCATGGCAGTGCTGGGGCAGCTGGCGCGGCGGCTGGGGGTGGCGGAGAGCTGGGAACGCGACCGGCGCTGTGCCGCGGACCTCGCCCAGGCCTCACTCGGAGATGCCCAGCTGGTCCTGCTCCGGCCACGGAGGCTCATGAACCTCAACGGGCACAGTGTGGCCCAGGCGG
Seq A exon
GCGGGTTCTTTACCACCAAGTGGGGTTAATTGTGGCCTCTCCTCATGGGAGCCCAGAGTCAGGACAACCTTCCTGGGCAGATCAGTAGTAACCGGAGCCACTGTTTCCCTGGGCCAAG
Seq C2 exon
TGGAGCTGTTTGGACTGACTGCTGAGGAAGTTTACCTGGTACACGATGAGCTGGACAAGCCGCTGGGGAAAGTGGCTCTGAAGCTGGGAGGAAGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012736-2-8,2-7,2-6,2-5,2-4,2-3,2-2,2-1-8/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(39.9=100)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTTCCTGGCACGC
R:
TGTCCAGCTCATCGTGTACCA
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development