BtaEX0029143 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012736 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr11:98407326-98408308:-
Coord C1 exon
chr11:98408089-98408308
Coord A exon
chr11:98407514-98407613
Coord C2 exon
chr11:98407326-98407371
Length
100 bp
Sequences
Splice sites
3' ss Seq
CACTGTTTCCCTGGGCCAAGTGG
3' ss Score
0.36
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGCAGGTCTGGGAAACCCTGGACTTCCTGGCACGCGGCACAGCGTGGGCATGGCAGTGCTGGGGCAGCTGGCGCGGCGGCTGGGGGTGGCGGAGAGCTGGGAACGCGACCGGCGCTGTGCCGCGGACCTCGCCCAGGCCTCACTCGGAGATGCCCAGCTGGTCCTGCTCCGGCCACGGAGGCTCATGAACCTCAACGGGCACAGTGTGGCCCAGGCGG
Seq A exon
TGGAGCTGTTTGGACTGACTGCTGAGGAAGTTTACCTGGTACACGATGAGCTGGACAAGCCGCTGGGGAAAGTGGCTCTGAAGCTGGGAGGAAGCGCCAG
Seq C2 exon
GGGCCACAATGGAGTCCGTTCCTGTATGAGCTGCCTCAACTCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012736_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(39.9=100)
A:
PF0119514=Pept_tRNA_hydro=FE(19.1=100)
C2:
PF0119514=Pept_tRNA_hydro=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTTCCTGGCACGC
R:
AGTTGAGGCAGCTCATACAGGA
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development