DreEX0059820 @ danRer10
Exon Skipping
Gene
ENSDARG00000098206 | ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050306-33]
Coordinates
chr5:64400254-64402445:+
Coord C1 exon
chr5:64400254-64400473
Coord A exon
chr5:64402213-64402312
Coord C2 exon
chr5:64402400-64402445
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGTTATTTTAAAAGCCA
3' ss Score
4.44
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTTGTTGGCCTGGGAAACCCTGGCATGACTGGCTCTCGACACAGTGTTGGTATGGCTGTTCTCACAACGTTAGCTGAACGCTTGGGTGCGCCAGATGGCTGGAGATCTGACCGAAAAGTGTCAGGAGAGGTCGTTGTAACACAACTGCAGGACGTTCAGCTGGTTCTTCTTCGACCCAAATTACTGATGAACGTCAATGGCGTGAGTGTGGCAAAAGCAG
Seq A exon
CCAGCAGATATTTAATTCAGCCCGAACATATTCTCTTGATTCACGATGAGCTTGACAAACCGCTTGGGAAGTTTGGCATCAAACATGGTGGAAGTGCAAG
Seq C2 exon
GGGTCACAATGGTGTTAGGTCATGCGTGGACTGCCTACAGACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098206_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.169 C2=0.062
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(76.0=100)
A:
PF0119514=Pept_tRNA_hydro=FE(18.1=100)
C2:
PF0119514=Pept_tRNA_hydro=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACTGGCTCTCGACACAG
R:
TCAGTCTGTAGGCAGTCCACG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]