MmuEX6100623 @ mm9
Exon Skipping
Gene
ENSMUSG00000053746 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913779]
Coordinates
chr2:32631824-32632548:+
Coord C1 exon
chr2:32631824-32632043
Coord A exon
chr2:32632227-32632326
Coord C2 exon
chr2:32632503-32632548
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTCCCTGTGCCAAGCGG
3' ss Score
4.38
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCTGGCCTGGGGAACCACGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGACTCGCGCTGTGCTGCTGACCTCGCCCTGGCCCCGCTCGGGGATGCTCAGCTGGTACTGCTCCGGCCGCGGCGCCTCATGAACGTCAACGGGCGCAGCGTAGCCCGAGCTG
Seq A exon
CGGAGCTGTTTGGGCTGACTGCGGAGGAGATCTATCTGGTCCATGATGAACTGGACAAGCCGTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq C2 exon
GGGCCATAATGGAGTCCGTTCCTGCATTAGCTGTCTGAACTCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053746-'1-4,'1-1,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(40.8=100)
A:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
C2:
PF0119514=Pept_tRNA_hydro=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGTGGGCATGGCG
R:
TTGGAGTTCAGACAGCTAATGCA
Band lengths:
226-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: