RnoEX6016486 @ rn6
Exon Skipping
Gene
ENSRNOG00000049034 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:RGD Symbol;Acc:1310165]
Coordinates
chr3:11812458-11813185:+
Coord C1 exon
chr3:11812458-11812677
Coord A exon
chr3:11812873-11812972
Coord C2 exon
chr3:11813140-11813185
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTCCTTGTGCCAAGCGG
3' ss Score
4.22
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCTGGCCTGGGGAACCCCGGAATGCCTGGCACTCGGCACAGCGTAGGCATGGCAGTGCTGGGGCAAATAGCACAGCGACTGGGAGTGGCAGAGAACTGGGCTCGTGACTCGCGCTGCGCTGCTGACCTCGCCCTGGCCCCATTCGGGGATGCTCAGCTGGTACTGCTCCGGCCAAGGCGCCTCATGAACGTCAACGGGCGCAGCGTAGCCAAAGCTG
Seq A exon
CGGAGCTGTTTGGGCTGAGTGCGGAGGAGATCTACCTGGTGCATGACGAACTGGACAAACCCTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq C2 exon
GGGCCATAATGGAGTCCGTTCCTGCATTAGCTGTCTGAACTCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049034-'1-6,'1-2,2-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(40.8=100)
A:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
C2:
PF0119514=Pept_tRNA_hydro=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCCGGAATGCCTGG
R:
AGACAGCTAATGCAGGAACGG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]