BtaALTA0024408-1/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103137213-103138260:-
Coord C1 exon
chr11:103138067-103138260
Coord A exon
NA
Coord C2 exon
chr11:103137213-103137272
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTCCTCACGGCCTCCTCTAGATA
3' ss Score
5.25
Exon sequences
Seq C1 exon
TATGAAAACGAGTCGGCCCTGAACCTGTACGAGACCTGCAAGGTGCGGACTGTGAAGGCGGGCACGCTGGAGAAGCTGGTGGAGCACCTGGTGCCCGCCTTCCAGGGCAGCGACCTCTCCTACGTCACCATCTTCCTGTGCACCTACCGAGCCTTCACCACCACCCAGCAGGTCCTGGACCTGCTGTTCAAGAG
Seq A exon
NA
Seq C2 exon
ATATGGGTGCATCCTTCCCTACTCCAGCGAGGACGGCGGACCCCAGGACCAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-1-4,1-3,1-2,1-1-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(47.5=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCTCTCCTACGTCACCAT
R:
TCGCTGGAGTAGGGAAGGATG
Band lengths:
114-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development